3d image registration tool (rigid image registration) Search Results


imaris v9 5 software package  (Oxford Instruments)
99
Oxford Instruments imaris v9 5 software package
Imaris V9 5 Software Package, supplied by Oxford Instruments, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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imaris v9 5 software package - by Bioz Stars, 2026-05
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tri/3d-bon software  (Ratoc Systems Inc)
90
Ratoc Systems Inc tri/3d-bon software
Tri/3d Bon Software, supplied by Ratoc Systems Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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tri/3d-bon software - by Bioz Stars, 2026-05
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alicona mex 6.1 software  (Alicona Imaging GmbH)
90
Alicona Imaging GmbH alicona mex 6.1 software
Alicona Mex 6.1 Software, supplied by Alicona Imaging GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/alicona mex 6.1 software/product/Alicona Imaging GmbH
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alicona mex 6.1 software - by Bioz Stars, 2026-05
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cellsens  (Evident Corporation)
99
Evident Corporation cellsens
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
Cellsens, supplied by Evident Corporation, used in various techniques. Bioz Stars score: 99/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/cellsens/product/Evident Corporation
Average 99 stars, based on 1 article reviews
cellsens - by Bioz Stars, 2026-05
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3d viewing software  (Xradia Inc)
90
Xradia Inc 3d viewing software
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
3d Viewing Software, supplied by Xradia Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/3d viewing software/product/Xradia Inc
Average 90 stars, based on 1 article reviews
3d viewing software - by Bioz Stars, 2026-05
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syngo ct somatom definition flash pulmo 3d image processing software  (Siemens AG)
90
Siemens AG syngo ct somatom definition flash pulmo 3d image processing software
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
Syngo Ct Somatom Definition Flash Pulmo 3d Image Processing Software, supplied by Siemens AG, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/syngo ct somatom definition flash pulmo 3d image processing software/product/Siemens AG
Average 90 stars, based on 1 article reviews
syngo ct somatom definition flash pulmo 3d image processing software - by Bioz Stars, 2026-05
90/100 stars
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3d modeling software amira  (Visage Imaging GmbH)
90
Visage Imaging GmbH 3d modeling software amira
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
3d Modeling Software Amira, supplied by Visage Imaging GmbH, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/3d modeling software amira/product/Visage Imaging GmbH
Average 90 stars, based on 1 article reviews
3d modeling software amira - by Bioz Stars, 2026-05
90/100 stars
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lsm software zen 2012  (Carl Zeiss)
90
Carl Zeiss lsm software zen 2012
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
Lsm Software Zen 2012, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/lsm software zen 2012/product/Carl Zeiss
Average 90 stars, based on 1 article reviews
lsm software zen 2012 - by Bioz Stars, 2026-05
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qangio xa 3d/qfr 2.1-research software package  (Medis)
90
Medis qangio xa 3d/qfr 2.1-research software package
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
Qangio Xa 3d/Qfr 2.1 Research Software Package, supplied by Medis, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/qangio xa 3d/qfr 2.1-research software package/product/Medis
Average 90 stars, based on 1 article reviews
qangio xa 3d/qfr 2.1-research software package - by Bioz Stars, 2026-05
90/100 stars
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zeiss lsm510 software  (Carl Zeiss)
90
Carl Zeiss zeiss lsm510 software
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
Zeiss Lsm510 Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/zeiss lsm510 software/product/Carl Zeiss
Average 90 stars, based on 1 article reviews
zeiss lsm510 software - by Bioz Stars, 2026-05
90/100 stars
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xmreconstructor software  (Carl Zeiss)
90
Carl Zeiss xmreconstructor software
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
Xmreconstructor Software, supplied by Carl Zeiss, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/xmreconstructor software/product/Carl Zeiss
Average 90 stars, based on 1 article reviews
xmreconstructor software - by Bioz Stars, 2026-05
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3d imaging software vk-h1xac  (KEYENCE)
90
KEYENCE 3d imaging software vk-h1xac
( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus <t>cellSens</t> deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015
3d Imaging Software Vk H1xac, supplied by KEYENCE, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/3d imaging software vk-h1xac/product/KEYENCE
Average 90 stars, based on 1 article reviews
3d imaging software vk-h1xac - by Bioz Stars, 2026-05
90/100 stars
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Image Search Results


( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus cellSens deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015

Journal: eLife

Article Title: AMP-activated protein kinase fortifies epithelial tight junctions during energetic stress via its effector GIV/Girdin

doi: 10.7554/eLife.20795

Figure Lengend Snippet: ( A ) Subconfluent monolayers of MDCK cells grown on cover slips were fixed and stained for α-Tubulin (green), pS245-GIV (red) and DAPI (blue; nuclei) and analyzed by confocal microscopy. Image A shows an xy-plane maximum projection of a deconvolved stack of images, acquired at 20-nm z-intervals using a Olympus cellSens deconvolution (constrained iterative) and restoration system (Olympus FV3000) and a Apochromat 60XOSC2, NA 1.4 objective. The total thickness of the image stack is 4.8 mm. Two regions of interest (ROI), 1 and 2, are indicated with white boxes. ( B–D ) 3D reconstruction of each ROI shows the close proximity of pS245-GIV (red) to connecting microtubules (green) running along the cell-cell junctions (arrowheads). Little or no pS245-GIV staining (red pixels) is seen on microtubules at the 'free' cell border in panel D (arrows). ( E – H ) Maximum projected ROI‘s 1 and 2 are magnified in E and G , respectively. Individual Z-stacks of each ROI is shown in . Single Z-stacks of ROI‘s 1 and 2 are displayed in F and H , respectively. The insets in panels F and H show red, green and merged channels of respective figures. The white line indicates the pixels used for generating the RGB profile plots shown in I and J . RGB profiles show that pS245-GIV (red pixels) often co-localizes either completely with microtubule tracks (green pixels; I ) or lay between two microtubule tracks ( J ) at the cell-cell junctions. DOI: http://dx.doi.org/10.7554/eLife.20795.015

Article Snippet: Images were processed using the 3D deconvolution and 3D reconstructions tools of the Olympus cellSens (version Dimension Desktop 1.15) software.

Techniques: Staining, Confocal Microscopy